史秀京, 雷立健, 郭建勇, 张国艳, 康辉. 镉致大鼠肾脏微小RNA-21表达的生物信息学分析[J]. 环境与职业医学, 2016, 33(2): 113-118. DOI: 10.13213/j.cnki.jeom.2016.15549
引用本文: 史秀京, 雷立健, 郭建勇, 张国艳, 康辉. 镉致大鼠肾脏微小RNA-21表达的生物信息学分析[J]. 环境与职业医学, 2016, 33(2): 113-118. DOI: 10.13213/j.cnki.jeom.2016.15549
SHI Xiujing, LEI Li-jian, GUO Jian-yong, ZHANG Guo-yan, KANG Hui. Bioinformatics Analysis of miRNA-21 Expression in Kidney from Rat Exposed to Cadmium[J]. Journal of Environmental and Occupational Medicine, 2016, 33(2): 113-118. DOI: 10.13213/j.cnki.jeom.2016.15549
Citation: SHI Xiujing, LEI Li-jian, GUO Jian-yong, ZHANG Guo-yan, KANG Hui. Bioinformatics Analysis of miRNA-21 Expression in Kidney from Rat Exposed to Cadmium[J]. Journal of Environmental and Occupational Medicine, 2016, 33(2): 113-118. DOI: 10.13213/j.cnki.jeom.2016.15549

镉致大鼠肾脏微小RNA-21表达的生物信息学分析

Bioinformatics Analysis of miRNA-21 Expression in Kidney from Rat Exposed to Cadmium

  • 摘要: 目的

    初步筛选镉暴露早期肾脏组织差异表达的微小RNA(miRNA),并探讨差异表达miR-21的靶基因主要参与的GO富集与KEGG通路。

    方法

    24只SPF级SD雄性大鼠随机分为4组,分别为对照组和低、中、高镉暴露组。大鼠背部皮下注射0、0.5、1.0和2.0 mg/kg氯化镉溶液,每周5 d,持续2周。基因芯片筛选差异表达的miRNA,实时定量PCR验证差异表达的miR-21,并对差异表达的miR-21进行生物信息学分析;酶联免疫吸附实验检测肾功能指标。

    结果

    与对照组相比,2.0 mg/kg镉暴露导致大鼠出现了肾损伤(P < 0.05),且可以增强miR-21在肾脏组织的表达水平(P < 0.05)。miR-21靶基因主要集中于DNA调节转录、氨基酸磷酸化、氧化应激等生物学过程及与蛋白结合、转录因子结合等分子功能上,存在于细胞核、细胞膜、细胞质、线粒体、内质网等细胞组分中,主要参与MAPK信号通路、转化生长因子-β信号通路。

    结论

    miR-21在镉暴露所致大鼠肾损伤中表达上调,并可能参与多条信号通路的调控。

     

    Abstract: Objective

    To explore the early differential expression of microRNA (miRNA) of rat's injured kidney induced by cadmium exposure, and to predict the target genes which mainly participate in the Gene Ontology (GO) enrichment and Kyoto Encyclopedia of Gene and Genomes (KEGG) pathway.

    Methods

    Twenty-four SPF-grade SD male rats were randomly divided into four groups and given subcutaneous injection of 0, 0.5, 1.0, and 2.0 mg/kg CdCl2, respectively, 5 days per week for 2 weeks. Gene chip technology and real time polymerase chain reaction were employed to explore and verify the differential expression of miRNA. The miR-21 with differential expression was subjected to bioinformatics analysis. Enzyme-linked immunosorbent assay was used to detect the indices of renal function.

    Results

    Compared with the control group, renal damage were found in the 2.0 mg/kg Cd-exposed group (P < 0.05) and the expression of miR-21 was enhanced (P < 0.05). miR-21 target genes were mainly enriched in biological processes (DNA regulated transcription, amino acid phosphorylation, and oxidative stress), molecular factions (protein binding and transcription factors binding), and cell components such as cell nucleus, membrane, cytoplasm, mitochondria, and endoplasmic reticulum. They also involved in MAPK and transforming growth factor-β signaling pathways.

    Conclusion

    miR-21 is up-regulated in the injured rat renal tissues induced by cadmium exposure and may play an important role through multiple signal transduction pathways.

     

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